Power, Sex, Suicide: Mitochondria and the Meaning of Life (62 page)

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Martin, W., Rotte, C., Hoffmeister, M., Theissen, U., Gelius-Dietrich, G., Ahr, S., and Henze, K. Early cell evolution, eukaryotes, anoxia, sulfide, oxygen, fungi first (?), and a tree of genomes revisited.
IUBMB (International Union of Biochemistry and Molecular Biology) Life
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Why mitochondrial genes still exist

Allen, J. F. Control of gene expression by redox potential and the requirement for chloroplast and mitochondrial genes.
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—— The function of genomes in bioenergetic organelles.
Philosophical Transactions of the Royal Society of London B: Biological Sciences
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—— Raven, J. A. Free-radical-induced mutation vs redox regulation: Costs and benefits of genes in organelles.
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482–492; 1996.

Chomyn, A. Mitochondrial genetic control of assembly and function of complex I in mammalian cells.
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Race, H. L., Herrmann, R. G., and Martin, W. Why have organelles retained genomes?
Trends in Genetics
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364–370; 1999.

Phylogeny of the ATP exporters

Andersson, S. G. E., Karlberg, O., Canbäck, B., and Kurland, C. G. On the origin of mitochondria: A genomics perspective.
Philosophical Transactions of the Royal Society of London B: Biological Sciences
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165–179; 2003.

Löytynoja, A., and Milinkovitch, M. C. Molecular phylogenetic analyses of the mitochondrial ADP-ATP carriers: The plantae/fungi/metazoa trichotomy revisited.
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Why bacteria are still bacteria

Lane, N. Mitochondria: Key to complexity. In W. Martin (ed.),
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Part 4
General texts

Ball, Philip.
The Self-Made Tapestry
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Gould, Stephen Jay.
Full House
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Haldane, J. B. S.
On Being the Right Size,
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Mandelbrot, Benoit.
The Fractal Geometry of Nature
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Ridley, Mark.
Mendel’s Demon
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The power laws of biology

Bennett, A. F. Structural and functional determinates of metabolic rate.
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Heusner, A. Size and power in mammals.
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Kleiber, M.
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Fractal geometry and scaling

Banavar, J., Damuth, J., Maritan, A., and Rinaldo, A. Supply-demand balance and metabolic scaling.
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West, G. B., Brown J. H., and Enquist B. J. A general model for the origin of allometric scaling in biology.
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—— —— —— The fourth dimension of life: Fractal geometry and allometric scaling of organisms.
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—— Woodruff, W. H., and Brown, J. H. Allometric scaling of metabolic rate from molecules and mitochondria to cells and mammals.
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Questioning the universal constant

Dodds, P. S., Rothman, D. H., and Weitz, J. S. Re-examination of the ‘3/4–law’ of metabolism.
Journal of Theoretical Biology
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White, C. R., and Seymour, R. S. Mammalian basal metabolic rate is proportional to body mass
2/3
.
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4046–4049; 2003.

Resting and maximal metabolic rates

Bishop, C. M. The maximum oxygen consumption and aerobic scope of birds and mammals: Getting to the heart of the matter.
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266:
2275–2281; 1999.

Tissue oxygen concentration in marine invertebrates and mammals

Massabuau, J. C. Primitive and protective, our cellular oxygenation status?
Mechanisms of Ageing and Development
124:
857–863; 2003.

Components of metabolic rate in mammals

Porter, R. K. Allometry of mammalian cellular oxygen consumption.
Cellular and Molecular Life Sciences
58:
815–822; 2001.

Rolfe, D. F. S., and Brown, G. C. Cellular energy utilization and molecular origin of standard metabolic rate in mammals.
Physiological Reviews
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731–758; 1997.

Scaling of metabolic rate

Darveau, C. A., Suarez, R. K., Andrews, R. D., and Hochachka, P. W. Allometric cascade as a unifying principle of body mass effects on metabolism.
Nature
417:
166–170; 2002.

Hochachka, P. W., Darveau, C. A., Andrews, R. D., and Suarez, R. K. Allometric cascade: A model for resolving body mass effects on metabolism.
Comparative Biochemistry and Physiology A: Molecular and Integrative Physiology
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675–691; 2003.

Storey, K. B. Peter Hochachka and oxygen. In R. C. Roach et al. (eds.),
Hypoxia: Through the Lifecycle
. Kluwer Academic/Plenum Publishers, New York, USA, 2003.

Weibel, E. R. The pitfalls of power laws.
Nature
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Evolution of endothermy

Bennett, A. F., and Ruben, J. A. Endothermy and activity in vertebrates.
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649–653; 1979.

—— Hicks, J. W., and Cullum, A. J. An experimental test for the thermoregulatory hypothesis for the evolution of endothermy.
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Hayes, J. P., and Garland, T., Jr. The evolution of endothermy: Testing the aerobic capacity hypothesis.
Evolution
49:
836–847; 1995.

Ruben, J. The evolution of endothermy in mammals and birds: From physiology to fossils.
Annual Review of Physiology
57:
69–85; 1995.

Mitochondria in muscles and organs of lizards and mammals

Else, P. L., and Hulbert, A. J. An allometric comparison of the mitochondria of mammalian and reptilian tissues: The implications for the evolution of endothermy.
Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology
156:
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Hulbert, A. J., and Else, P. L. Evolution of mammalian endothermic metabolism: Mitochondrial activity and cell composition.
American Journal of Physiology
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Proton leak

Brand, M. D., Couture, P., Else, P. L., Withers, K. W., and Hulbert, A. J. Evolution of energy metabolism: Proton permeability of the inner membrane of liver mitochondria is greater in a mammal than in a reptile.
Biochemical Journal
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Brookes, P. S., Buckingham, J. A., Tenreiro, A. M., Hulbert, A. J., and Brand, M. D. The proton permeability of the inner membrane of liver mitochondria from ectothermic and endothermic vertebrates and from obese rats: Correlations with standard metabolic rate and phospholipid fatty acid composition.
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Speakman, J. R., Talbot, D. A., Selman, C., Snart, S., McLaren, J. S., Redman, P., Krol, E., Jackson, D. M., Johnson, M. S., and Brand, M. D. Uncoupled and surviving: Individual mice with high metabolism have greater mitochondrial uncoupling and live longer.
Aging Cell
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Elastic strain in kangaroos

Bennett, M. B., and Taylor, G. C. Scaling of elastic strain energy in kangaroos and the benefits of being big.
Nature
378:
56–59; 1995.

Cell volume, nuclear volume and DNA content

Cavalier-Smith, T. Economy, speed and size matter: Evolutionary forces driving nuclear genome miniaturization and expansion.
Annals of Botany
95:
147–175; 2005.

Part 5
General texts

Buss, Leo.
The Evolution of the Individual
. Princeton University Press, New Jersey, USA, 1987.

Dawkins, Richard.
The Selfish Gene
. Oxford University Press, Oxford, UK, 1976.

Dawkins, Richard
The Extended Phenotype
. Oxford University Press, Oxford, UK, 1984.

——
The Ancestor’s Tale: A Pilgrimage to the Dawn of Life
. Weidenfeld & Nicolson, London, UK, 2004.

Harold, Franklin.
The Vital Force: A Study of Bioenergetics
. W. H. Freeman and Co., New York, USA, 1986.

Klarsfeld, André, and Revah, Frédéric.
The Biology of Death: Origins of Mortality.
Cornell University Press, Ithaca, USA, 2004.

Margulis, Lynn. Gaia is a tough bitch. In John Brockman (ed.),
The Third Culture: Beyond the Scientific Revolution
. Simon & Schuster, New York, USA, 1995.

Maynard-Smith, John, and Szathmáry, Eörs.
The Major Transitions of Evolution
. W. H. Freeman, San Francisco, USA, 1995.

Levels of selection

Blackstone, N. W. A units-of-evolution perspective on the endosymbiont theory of the origin of the mitochondrion.
Evolution
49:
785–796; 1995.

Maynard-Smith, J. The units of selection.
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Mayr, E. The objects of selection.
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Apoptosis and the evolution of multicellularity

Huettenbrenner, S., Maier, S., Leisser, C., Polgar, D., Strasser, S., Grusch, M., and Krupitza, G. The evolution of cell death programs as prerequisites of multicellularity.
Mutation Research
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Michod, R. E., and Roze, D. Cooperation and conflict in the evolution of multicellularity.
Heredity
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Discovery of apoptosis

Featherstone, C. Andrew Wyllie: From left field to centre stage.
The Lancet
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192; 1998.

Kerr, J. F. History of the events leading to the formulation of the apoptosis concept.
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—— Wyllie A. H., and Currie A. R. Apoptosis: A basic biological phenomenon with wide-ranging implications in tissue kinetics.
British Journal of Cancer
26:
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Caspase enzymes

Barinaga, M. Cell suicide: By ICE, not fire.
Science
263:
754–756; 1994.

Horvitz, H. R. Nobel lecture: Worms, life and death.
Bioscience Reports
23:
239–303; 2003.

—— Sulston, J. E. Joy of the worm.
Genetics
126:
287–292; 1990.

Wiens, M., Krasko, A., Perovic, S., and Muller, W. E. G. Caspase-mediated apoptosis in sponges: cloning and function of the phylogenetic oldest apoptotic proteases from Metazoa.
Biochimica et Biophysica Acta
1593:
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